galaxy.tool_util.biotools package¶

Submodules¶

galaxy.tool_util.biotools.interface module¶

class galaxy.tool_util.biotools.interface.ParsedBiotoolsEntry[source]¶

Bases: object

Provide XML wrapper relevant entities from a bio.tool entry - topics and operations.

biotoolsID: str¶

edam_topics: List[str]¶

edam_operations: List[str]¶

class galaxy.tool_util.biotools.interface.BiotoolsEntry[source]¶

Bases: object

Parse the RAW entries of interest for Galaxy from a bio.tools entry.

biotoolsID: str¶

topic: List[dict]¶

function: List[dict]¶

static from_json(from_json: Dict[str, Any]) → BiotoolsEntry[source]¶

property edam_info: ParsedBiotoolsEntry¶

galaxy.tool_util.biotools.interface.simplify_edam_dicts(a_list: List[Dict[str, str]])[source]¶

galaxy.tool_util.biotools.interface.simplify_edam_dict(as_dict: Dict[str, str]) → str | None[source]¶

galaxy.tool_util.biotools.source module¶